Publications 2020

Peer-reviewed Publications

 1.  Burnett J., Wu S.T., den Bakker H.C., Cook P.W., Veenhuizen D.R., Hammons S.R., Singh M. & Oliver H.F., Listeria monocytogenes is prevalent in retail produce environments but Salmonella enterica is  rare, Food Control (2020), doi:

 2. Dev Kumar G, Mishra A, Dunn L, Townsend A, Oguadinma IC, Bright KR, Gerba CP. 2020. Biocides and novel antimicrobial agents for the mitigation of coronaviruses. Frontiers Microbiol.

 3. Forghani F, Li S, Zhang S, Mann DA, Deng X, den Bakker HC, Diez-Gonzalez F. 2020. Salmonella enterica and Escherichia coli in wheat flour: detection and serotyping by a quasimetagenomic approach assisted by magnetic capture, multiple-displacement amplification, and real-time sequencing. Appl Environ Microbiol. 86(13):e00097-20. doi: 10.1128/AEM.00097-20.

   4..  Hassan J, Kassem II. 2020. Audacious Hitchhikers: The role of travel and the international food trade in the global dissemination of mobile colistin-resistance (mcr) genes. Antibiotics 9, 370;


 5.  Hwang D, Rothrock Jr MJ, Pang H, Kumar GD, Mishra A. 2020. Farm management practices that affect the prevalence of Salmonella in pastured poultry farms. LWT, 109423.

 6 He Y, Zhou X, Chen Z, Deng X, Gehring A, Ou H, Zhang L, Shi X. 2020. PRAP: Pan resistome analysis pipeline. BMC Bioinform 21:20

 7.  Katz L, Griswold T, Morrison SS, Caravas JA, Zhang S, den Bakker HC, Deng X, Carleton HA. 2019. Mashtree: a rapid comparison of whole genome sequence files. J Open So Soft 4(44), 1762 DOI: 10.21105/joss.01762

 8.  Qi Y, He Y, Beuchat LR, Zhang W, Deng X. 2020. Glove-mediated transfer of Listeria monocytogenes on fresh-cut cantaloupe. Food Microbiol 88(103396) DOI: 10.1016/

 9.  Sourenian T, Mann D, Li S, Deng X, Jaafar H, Kassem II. 2020.Dissemination of multidrug-resistant Escherichia coli harboring the mobile colistin resistance gene mcr-1.1 on transmissible plasmids in the Mediterranean Sea. J Glob Antimicrob Resist. 22:84-86. doi: 10.1016/j.jgar.2020.05.007

10.   Xu F, Ge C, Luo H, Li S, Wiedmann M, Deng X, Zhang G, Stevenson A, Baker RC, Tang S. 2020. Evaluation of real-time nanopore sequencing for Salmonella serotype prediction. Food Microbiol. 89:103452