Publications 2021

Peer-reviewed Publications

1.         Deng X, Cao S, Horn AL. 2021. Emerging applications of machine learning in food safety. Annu Rev Food Sci Technol. doi: 10.1146/annurev-food-071720-024112. https://pubmed.ncbi.nlm.nih.gov/33472015/

2.         Hassan J, Mann D, Li S, Deng X, Kassem II. 2021. Emergence of the mobile colistin resistance gene, mcr-1, in multidrug-resistant E. coli isolated from the fecal matter of toddlers in a community. Antimmicrob Agents Chem. AAC.00243-21; doi: 10.1128/AAC.00243-21. https://pubmed.ncbi.nlm.nih.gov/33593846/

3.         Hudson LK, Peters TL, Bryan DW, Song Y, den Bakker HC, Denes TG. 2021. Complete Genome sequences of three Listeria monocytogenes bacteriophage propagation strains. Microbiol Resour Announc. 10(1):e01159-20. doi: 10.1128/MRA.01159-20. https://pubmed.ncbi.nlm.nih.gov/33414304/

4.         Hyeon J-Y, Li S, Mann DA, Zhang S, Kim K-J, Lee D-H, Deng X, Song C-S. 2021. Whole-genome sequencing analysis of Salmonella Enterica serotype enteritidis isolated from poultry sources in South Korea. 2010–2017. Pathogens. 10(1):45. https://doi.org/10.3390/pathogens10010045

5.         Juneja VK, Osoria M, Altuntas EG, Salazar JK, Kumar GD, Sehgal S, and Baker D. 2021. Inactivation of Listeria monocytogenes, Escherichia coli O157:H7, and Salmonella spp. on dates by antimicrobial washes. J Food Process Preserv. Manuscript e15282. https://doi.org/10.1111/jfpp.15282

6.         Nasser NA, Alhaj Sulaiman A, Mann D, Li S, Deng X, Kassem II. 2021. Draft genome sequences of multidrug-resistant and mcr-1.1- harboring Escherichia coli isolated from drinking and well waters used in Syrian refugee camps. Microbiol Resour Announc. 10:e01252-20. https://doi.org/10.1128/MRA.01252-20

7.         Peters TL, Hudson LK, Bryan DW, Song Y, den Bakker HC, Kucerova Z, Denes TG. 2021. Complete genome sequence of a serotype 7 Listeria monocytogenes strain. FSL R9-0915. Microbiol Resour Announc. 2021 Jan 7;10(1):e01158-20. doi: 10.1128/MRA.01158-20. https://pubmed.ncbi.nlm.nih.gov/33414303/

8.         White E, Kumar GD, da Silva ALBR, Kerr WL, Cimowsky S, Widmer JA, Dunn LL. 2021. Postharvest reduction of Salmonella enterica on tomatoes using a pelargonic acid emulsion. Foods. 10(1):178. https://doi.org/10.3390/foods10010178.

9.         Levent G, Schlochtermeier A, Ives SE, Norman KN, Lawhon SD, Loneragan GH, Anderson RC, Vinasco J, Bakker HCD, Scott HM. 2021. High-resolution genomic comparisons within Salmonella enterica serotypes derived from beef feedlot cattle: parsing the roles of cattle source, pen, animal, sample type and production period. Appl Environ Microbiol. Apr 16:AEM.00485-21. doi: 10.1128/AEM.00485-21. https://pubmed.ncbi.nlm.nih.gov/33863705/

10.       Brewer SS, Lowe CA, Beuchat LR, Ortega YR. 2021. Survival of Salmonella and Shiga Toxin-producing Escherichia coli and Changes in Indigenous Microbiota During Fermentation of Kombucha Made from Home-brewing Kits. J Food Prot. Apr 14. doi: 10.4315/JFP-20-483. https://pubmed.ncbi.nlm.nih.gov/33852721/

11.       Smith CJ, Olszewska MA, Diez-Gonzalez F. 2021. Selection and application of natural antimicrobials to control Clostridium perfringens in sous-vide chicken breasts inhibition of C. perfringens in sous-vide chicken. Int J Food Microbiol. Mar 31;347:109193. doi: 10.1016/j.ijfoodmicro.2021.109193. https://pubmed.ncbi.nlm.nih.gov/33836443/

12.       Nasser NA, Mann D, Li S, Deng X, Kassem II. 2021. Draft Genome Sequences of Colistin-Resistant and mcr-1.1-Carrying Escherichia coli Strains Isolated from Irrigation Water. Microbiol Resour Announc. Apr 8;10 (14):e00120-21. doi: 10.1128/MRA.00120-21. https://pubmed.ncbi.nlm.nih.gov/33833024/

13.       Wu X, Luo H, Xu F, Ge C, Li S, Deng X, Wiedmann M, Baker RC, Stevenson A, Zhang G, Tang S. 2021. Evaluation of Salmonella Serotype Prediction With Multiplex Nanopore Sequencing. Front Microbiol. Mar 10;12:637771. doi: 10.3389/fmicb.2021.637771. eCollection 2021. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7987803/

14.       Kassem II, Mann D, Li S, Deng X. 2021. Draft genome sequences and resistome analysis of multidrug-resistant mcr-1-harbouring Escherichia coli isolated from pre-harvest poultry in Lebanon. J Glob Antimicrob Resist. Mar 21;25:114-116. doi: 10.1016/j.jgar.2021.03.001. https://pubmed.ncbi.nlm.nih.gov/33833024/

15.       Helmy YA, Kassem II, Rajashekara G. 2021. Immuno-modulatory effect of probiotic E. coli Nissle 1917 in polarized human colonic cells against Campylobacter jejuni infection. Gut Microbes. Jan-Dec;13(1):1-16. doi: 10.1080/19490976.2020.1857514. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7781529/

16.       Lamm KW, Randall NL, Diez-Gonzalez F. 2021. Critical Food Safety Issues Facing the Food Industry: A Delphi Analysis. J Food Prot. Apr 1;84(4):680-687. doi: 10.4315/JFP-20-372. https://pubmed.ncbi.nlm.nih.gov/33270839/

17.       Xu F, Ge C, Li S, Tang S, Wu X, Luo H, Deng X, Zhang G, Stevenson A, Baker RC. 2021. Evaluation of nanopore sequencing technology to identify Salmonella enterica Choleraesuis var. Kunzendorf and Orion var. 15+, 34. Int J Food Microbiol. Mar 19;346:109167. doi: 10.1016/j.ijfoodmicro.2021.109167. https://pubmed.ncbi.nlm.nih.gov/33774575/