Publications 2019

Peer-reviewed Publications

1.      Alhaj Sulaiman AA, Kassem II. 2019. First report of the plasmid-borne colistin resistance gene (mcr-1) in Proteus mirabilis isolated from domestic and sewer waters in Syrian refugee camps. Travel Med Infect Dis. 2019 Sep 12:101482. doi: 10.1016/j.tmaid.2019.101482. https://www.sciencedirect.com/science/article/pii/S1477893919301668?via%3Dihub

2.      Bradley P, den Bakker HC, Rocha EPC, McVean G, Iqbal Z. 2019. Ultrafast search of all deposited bacterial and viral genomic data. Nature Biotechnol. 37:152–159. https://pubmed.ncbi.nlm.nih.gov/30718882/ 

3.      Bugarel M, Cook PW, den Bakker HC, Harhay D, Nightingale KK, Loneragan GH. 2019.  Complete genome sequences of four Salmonella enterica strains (including those of serotypes Montevideo, Mbandaka, and Lubbock) isolated from peripheral lymph nodes of healthy cattle. Microbiol Resour Announc. 10;8 pii: e01450-18. doi: 10.1128/MRA.01450-18. https://pubmed.ncbi.nlm.nih.gov/30643887/

4.      Cho Y, Kim H, Beuchat LR, Ryu J-H. 2020. Synergistic activities of gaseous oregano and thyme thymol essential oils against Listeria monocytogenes on surfaces of a laboratory medium and radish sprouts. Food Microbiol. 86: https://doi.org/10.1016/j.fm.2019.103357.

5.      Deen B, Diez-Gonzalez, F. 2019. Assessment of Pediococcus acidilactici ATCC 8042 as potential Salmonella surrogate for thermal treatments of toasted oats cereal and peanut butter. Food Microbiol. 83:187-192. https://www.sciencedirect.com/science/article/pii/S0740002019302357

6.      Dev Kumar G, Macarisin D, Micallef SA. 2019. Salmonella enterica filamentation induced by pelargonic acid is a transient morphotype. Appl Environ Microbiol. 85(2). pii: e02191-18. doi: 10.1128/AEM.02191-18.  https://pubmed.ncbi.nlm.nih.gov/30446555/

7.      Dev Kumar G, Ravishankar S. 2019. Ozonized water with plant antimicrobials: an effective method to inactivate Salmonella enterica on iceberg lettuce in the produce wash water. Environ. Res. 171:213-217. https://pubmed.ncbi.nlm.nih.gov/30682578/

8.      Diep B, Barretto C, Portmann A-C, Fournier C, Karczmarek A, Voets G, Li S, Deng X, Klijn A. 2019. Salmonella serotyping; comparison of the traditional method to a microarray-based method and an in-silico platform using whole genome sequencing data. Front. Microbiol. 10, 2554. https://pubmed.ncbi.nlm.nih.gov/31781065/

9.      Erickson MC, Liao, JY. 2019. Variation in recovery of Salmonella strains extracted from leafy greens. LWT-Food Sci. Tech.107:185-190. doi: 10.1016/j.lwt.2019.02.078

10.    Erickson MC, Liao JY, Payton AS, Cook PW, Adhikari K, Wang S, Bautista J, Pérez JCD. 2019.  Efficacy of acetic acid or chitosan for reducing the prevalence of Salmonella- and Escherichia coli O157:H7-contaminated leafy green plants in field systems. J Food Prot. 82:854-861. doi: 10.4315/0362-028X.JFP-18-347. https://pubmed.ncbi.nlm.nih.gov/31013166/

11.     Erickson MC, Liao JY. 2019. Exploratory study of the application of smoke aerosols to manure-based composting materials to reduce prevalence of Salmonella. J Food Prot.  82:804-809. doi: 10.4315/0362-028X.JFP-18-327. https://pubmed.ncbi.nlm.nih.gov/30986364/

12.    Erickson MC, Liao JY, Payton AS, Cook PW, Den Bakker HC, Bautista J, Díaz-Pérez JC. 2019. Survival of Salmonella enterica and Escherichia coli O157:H7 sprayed onto the foliage of field-grown cabbage plants. J Food Prot. 82:479-485. doi: 10.4315/0362-028X.JFP-18-326. https://pubmed.ncbi.nlm.nih.gov/30806554/

13.    Erickson MC, Liao JY, Payton AS, Cook PW, Ortega YR. 2019. Survival and internalization of Salmonella and Escherichia coli O157:H7 sprayed onto different cabbage cultivars during cultivation in growth chambers. J Sci Food Agric. doi: 10.1002/jsfa.9573. https://pubmed.ncbi.nlm.nih.gov/30624787/

14.    Erickson MC, Liao JY, Payton AS, Cook PW, Den Bakker HC, Bautista J, Pérez JCD. 2019. Pre-harvest internalization and surface survival of Salmonella and Escherichia coli O157:H7 sprayed onto different lettuce cultivars under field and growth chamber conditions. Int J Food Microbiol. 291:197-204. https://pubmed.ncbi.nlm.nih.gov/30551016/

15.    Esseili MA, Gao X, Boley P, Hou Y, Saif LJ, Brewer-Jensen P, Lindesmith LC, Baric RS, Atmar RL, Wang Q. 2019.   Human Norovirus histo-blood group antigen (HBGA) binding sites mediate the virus specific interactions with lettuce carbohydrates. Viruses. 11(9). pii: E833. doi: 10.3390/v11090833 https://www.mdpi.com/1999-4915/11/9/833

16.    Forghani F, den Bakker M, Liao J-Y, Payton AS, Futral AN, Diez-Gonzalez F. 2019. Salmonella and enterohemorrhagic Escherichia coli serogroups O45, O121, O145 in wheat flour: effects of long term storage and thermal treatments. Front. Microbiol. https://doi.org/10.3389/fmicb.2019.00323. https://pubmed.ncbi.nlm.nih.gov/30853953/

17.  Gadotti C, Forghani F, and Diez-Gonzalez F. 2020. Evaluation of single and combined antimicrobial treatments to inhibit Salmonella in queso fresco. Food Microbiol. 85: 103286. https://doi.org/10.1016/j.fm.2019.103286.

18.    Guo Y, Wang Y, Wang X, Zhang L, Ortega Y, Feng Y. 2019. Mitochondrial genome sequence variation as a useful marker for assessing genetic heterogeneity among Cyclospora cayetanensis isolates and source-tracking. Parasit Vectors. 12:47. doi: 10.1186/s13071-019-3294-1. https://pubmed.ncbi.nlm.nih.gov/30665345/

19.    Hmede, Z., Kassem, I. 2019. First report of the plasmid-borne colistin resistance gene (mcr-1) in Proteus mirabilis isolated from a toddler in non-clinical settings. IDCases. https://doi.org/10.1016/j.idcr.2019.e00651

20.    Hyeon JY, Mann DA, Wang J, Kim WK, Deng X. 2019. Rapid detection of Salmonella in poultry environmental samples using real-time PCR coupled with immunomagnetic separation and whole genome amplification. Poult Sci. doi: 10.3382/ps/pez425. https://pubmed.ncbi.nlm.nih.gov/31347691/

21.     Ji H, Kim H, Beuchat LR, Ryu J-H.  2019.  Synergistic antimicrobial activities of gaseous essential oils against Penicillium carylophilum on a laboratory medium and beef jerky.  Int J Food Microbiol.  291:104-110. https://pubmed.ncbi.nlm.nih.gov/30481661/

22.    Kirkland, C, Black E, Forghani F, Pomraning A, Sadowsky MJ, Diez-Gonzalez F. 2019. Room temperature growth of Salmonella enterica serovar Saintpaul in fresh Mexican salsa. J Food Prot. 82:102-108. https://pubmed.ncbi.nlm.nih.gov/30702939/

23.   Kim Y, Kim H, Beuchat LR, Ryu JH. 2019.  Inhibition of Listeria monocytogenes using biofilms of non-pathogenic soil bacteria (Streptomyces spp.) on stainless steel under desiccated condition. Food Microbiol. 79:61-65. https://pubmed.ncbi.nlm.nih.gov/30621876/

24.   Lee S, Kim H, Beuchat LR, Ryu JH. 2019. Development of a decontamination method to inactivate Acidovorax citrulli on Cucurbitaceae seeds without loss of seed viability.  J Sci Food Agric. doi:10.1002/jsfa.9841. https://pubmed.ncbi.nlm.nih.gov/31163092/

25.   Li S, Zhang S, Baert L, Jagadeesan B, Ngom-Bru C, Griswold T, Katz LS, Carleton HA, Deng X. 2019. Implications of mobile genetic elements for Salmonella enterica single nucleotide polymorphism subtyping and source tracking investigations. Appl Environ Microbiol. doi: 10.1128/AEM.01985-19. https://pubmed.ncbi.nlm.nih.gov/31585993/

26.   Ohta N, Norby B, Loneragan GH, Vinasco J, den Bakker HC, Lawhon SD, Norman KN, Scott HM. 2019. Quantitative dynamics of Salmonella and E. coli in feces of feedlot cattle treated with ceftiofur and chlortetracycline. PLoS ONE 14(12): e0225697. https://doi.org/10.1371/journal.pone.0225697

27.   Shi Y, Kim H, Lee H, Beuchat LR, Ryu J-H, Kim H.  2019.  Survival and growth of Listeria monocytogenes and Staphylococcus aureus on conventional and low-sodium bacon.  J Food Safety. 39:e12675. Doi.org/10.1111/jfs.12675.

28.   Sulaiman AAA, Kassem II. 2019. First report on the detection of the plasmid-borne colistin resistance gene mcr-1 in multi-drug resistant E. coli isolated from domestic and sewer waters in Syrian refugee camps in Lebanon. Travel Med Infect Dis. doi: 10.1016/j.tmaid.2019.06.014. https://pubmed.ncbi.nlm.nih.gov/31260746/

29.   Zhang S, Den-Bakker HC, Li S, Chen J, Dinsmore BA, Lane C, Lauer AC, Fields PI, Deng X. 2019. SeqSero2: rapid and improved Salmonella serotype determination using whole genome sequencing data. Appl Environ Microbiol. doi: 10.1128/AEM.01746-19. https://pubmed.ncbi.nlm.nih.gov/31540993/

30.  Zhang S, Li S, Gu W, den Bakker H, Boxrud D, Taylor A, Roe C, Driebe E, Engelthaler DM, Allard M, Brown E, McDermott P, Zhao S, Bruce BB, Trees E, Fields PI, Deng X. 2019. Zoonotic source attribution of Salmonella enterica serotype Typhimurium using genomic surveillance data, United States. Emerg Infect Dis. 25:82-91. https://pubmed.ncbi.nlm.nih.gov/30561314/

31.  Zhao T, Dev Kumar G.  2019.  Acid based microbicides for the control of foodborne and clinical pathogens. Nov. Res. Sci. 1:1-3.

32.  Zheng R., Zhao T, Hung Y, Adhikari K.  2019. Evaluation of bactericidal effects of phenyllactic acid on Escherichia coli O157:H7 and Salmonella Typhimurium on beef meat. J. Food Prot. 82:2016-2022. https://pubmed.ncbi.nlm.nih.gov/31692394/

33.  Zheng R, Zhao T, Wang Q.  2019.  Bactericidal effects of organic acids as sanitizing agent on iced storage shrimp. J. Nutr. Health Food Eng. 9:80-85.

 

Book Chapters

1.      Hassan J, El Gemayel L, Bashour I, and Kassem II. On the edge of a precipice: the global emergence and dissemination of plasmid-borne mcr genes that confer resistance to colistin, a last-resort antibiotic. 2019. In Antibiotics and Antimicrobial Resistance Genes in the Environment Volume 1, Hashmi M (Ed.). Advances in Environmental Pollution Research series, Elsevier. ISBN: 9780128188828.

2.      Diez-Gonzalez, F. 2019. Stress responses in foodborne bacteria, p. 79-102. In Doyle M, Diez-Gonzalez F, Hill C (eds.), Food Microbiology: Fundamentals and Frontiers, 5th ed. ASM Press, Washington DC.

3.      Erickson, MC. 2019. Microbiological issues associated with fruits, vegetables, nuts and grains, p. 179-208. In Doyle M, Diez-Gonzalez F, Hill, C (eds.), Food Microbiology: Fundamentals and Frontiers, 5th ed. ASM Press, Washington DC.

4.      Ryser, ET, Buchanan RL, Den Bakker HC. 2019. Listeria, p. 451-486. In Doyle M, Diez-Gonzalez F, Hill C (eds.), Food Microbiology: Fundamentals and Frontiers, 5th ed. ASM Press, Washington DC.

5.      Ortega Y. 2019. Protozoan parasites, p. 667-693. In Doyle, M, Diez-Gonzalez, F, Hill, C (eds.), Food Microbiology: Fundamentals and Frontiers, 5th ed. ASM Press, Washington DC.

6.      Gerner-Smidt P, Trees E. Carleton H, Katz L, Den Bakker HC, Deng X. 2019. Molecular source tracking and molecular subtyping, p. 971—988. In Doyle M, Diez-Gonzalez F, Hill C (eds.), Food  Microbiology: Fundamentals and Frontiers, 5th ed. ASM Press, Washington DC.

7.      Erickson, MC, Habteselassie MY. 2019. Microbiological constraints for use of reclaimed and reconditioned water in food production and processing operations, p. 1021-1049. In Doyle M,  Diez Gonzalez F, Hill C (eds.), Food Microbiology: Fundamentals and Frontiers, 5th ed. ASM Press, Washington DC.

8.      Erickson, MC, Doyle MP. 2019. Relevance of food microbiology issues to current trends (2008-2018) in food production and imported foods, p. 1049-1071. In Doyle M, Diez-Gonzalez F, Hill C (eds.), Food Microbiology: Fundamentals and Frontiers, 5th ed. ASM Press, Washington DC.