Publications 2022

2022 Peer-reviewed Publications

1. Cannon JL, Park GW, Anderson B, Leone C, Chao M, Vinjé J, Fraser AM. 2022. Hygienic monitoring in long-term care facilities using ATP, crAssphage, and human noroviruses to direct environmental surface cleaning. Am J Infect Control. 2022 Mar;50(3):289-294. doi: 10.1016/j.ajic.2021.11.014. PMID: 35184878; PMCID: PMC8903150.

2. Chung MY, Kim H, Beuchat LR, Ryu JH. 2022. Antimicrobial activities of plant essential oil vapours against Acidovorax citrulli and Xanthomonas campestris on Cucurbitaceae, Brassicaceae and Solanaceae seeds. J Appl Microbiol. 132(3):2189-2202. doi: 10.1111/jam.15352. Epub 2021 Nov 9. PMID: 34724307.

3. Fu Y, M'ikanatha NM, Lorch JM, Blehert DS, Berlowski-Zier B, Whitehouse CA, Li S, Deng X, Smith JC, Shariat NW, Nawrocki EM, Dudley EG. 2022. Salmonella enterica serovar Typhimurium from wild birds in the United States represent distinct lineages defined by bird type. Appl Environ Microbiol. AEM0197921. doi: 10.1128/AEM.01979-21. Epub ahead of print. PMID: 35108089.

4. Halimeh FB, Rafei R, Diene SM, Osman M, Kassem II, Jamal Akoum R, Moudani W, Hamze M, Rolain JM. 2022. Genome sequence of a multidrug-resistant Campylobacter coli strain isolated from a newborn with severe diarrhea in Lebanon. Folia Microbiol (Praha). doi: 10.1007/s12223-021-00921-w. Epub ahead of print. PMID: 34997523.

5. Reed A, Olszewska MA, Mann A, Novoa Rama E, Thippareddi H, Singh M, den Bakker HC. 2022. Draft genome sequences of two lactobacillus johnsonii and three Ligilactobacillus salivarius strains isolated from intestinal microbiomes of chickens. Microbiol Resour Announc. 11(2):e0092521. doi: 10.1128/mra.00925-21. Epub 2022 Feb 3. PMID: 35112897; PMCID: PMC8812308.

6. van der Putten BCL, Mendes CI, Talbot BM, de Korne-Elenbaas J, Mamede R, Vila-Cerqueira P, Coelho LP, Gulvik CA, Katz LS. 2022. The Asm Ngs Hackathon participants. software testing in microbial bioinformatics: a call to action. Microb Genom. 8(3). doi: 10.1099/mgen.0.000790. PMID: 35259087.

7. Esseili, MA, Mann A, Narwankar R, Kassem II, Diez-Gonzalez F, Hogan J. 2022. SARS-CoV-2 remains infectious for at least a month on artificially-contaminated frozen berries. Food Microbiol. 107:104084. doi: 10.1016/j.fm.2022.104084.

8. Fu Y, M'ikanatha NM, Lorch JM, Blehert DS, Berlowski-Zier B, Whitehouse CA, Li S, Deng X, Smith JC, Shariat NW, Nawrocki EM, Dudley EG. 2022. Salmonella enterica serovar Typhimurium from wild birds in the United States represent distinct lineages defined by bird type. Appl Environ Microbiol. AEM0197921. doi: 10.1128/AEM.01979-21. Epub ahead of print. PMID: 35108089.

9. Halimeh FB, Rafei R, Diene SM, Osman M, Kassem II, Jamal Akoum R, Moudani W, Hamze M, Rolain JM. 2022. Genome sequence of a multidrug-resistant Campylobacter coli strain isolated from a newborn with severe diarrhea in Lebanon. Folia Microbiol (Praha). doi: 10.1007/s12223-021-00921-w. Epub ahead of print. PMID: 34997523.

10. Hassan J, Mann D, Li S, Deng X, Kassem II. 2022. First report of the mobile colistin resistance gene, mcr-9.1, in Morganella morganii isolated from sewage in Georgia, USA. J Glob Antimicrob Resist. 9:S2213-7165(21)00267-8. doi: 10.1016/j.jgar.2021.11.013.

11. Hudson LK, Chaggar HK, Schamp CN, Claxton ML, Bryan DW, Peters TL, Song Y, Carlin CR, den Bakker HC, Denes TG. 2022. Phenotypic characterization and analysis of complete genomes of two distinct strains of the proposed species "L. swaminathanii". Sci Rep. 12(1):9137. doi: 10.1038/s41598-022-13119-y. PMID: 35650389; PMCID: PMC9159981.

12. Kassem II, Osman M. 2022. A brewing storm: the impact of economic collapse on the access to antimicrobials in Lebanon. J Glob Antimicrob Resist. 313-315. doi: 10.1016/j.jgar.2022.04.023. Epub 2022 May 2. PMID: 35513228.

13. Khoder M, Rafei R, Osman M, Kassem II, Shahin A, Hamze M, Rolain JM. 2022. Emergence of a Neisseria flavescens clinical strain with a high level of third-generation cephalosporins resistance in Lebanon. Diagn Microbiol Infect Dis. 103(1):115660. doi: 10.1016/j.diagmicrobio.2022.115660. Epub 2022 Feb 23. PMID: 35306445.

14. Oguadinma IC, Mishra A, Dev Kumar G. 2022. Research paper sunlight parameters influence the survival and decline of Salmonella and Escherichia coli in water. J Food Prot. doi: 10.4315/JFP-22-042. Epub ahead of print. PMID: 36040230.

15. Oguadinma IC, Mishra A, Juneja VK, Dev Kumar G. 2022. Antibiotic resistance influences growth rates and cross-tolerance to lactic acid in Escherichia coli O157:H7 H1730. Foodborne Pathog Dis. doi: 10.1089/fpd.2022.0009. Epub ahead of print. PMID: 35856661.

16. Osman M, Cummings KJ, El Omari K, Kassem II. Catch-22: War, Refugees, COVID-19, and the scourge of antimicrobial resistance. Front Med (Lausanne). 2022 Jun 24;9:921921. doi: 10.3389/fmed.2022.921921. PMID: 35814789; PMCID: PMC9263824.

17. Osman M, Kasir D, Rafei R, Kassem II, Ismail MB, El Omari K, Dabboussi F, Cazer C, Papon N, Bouchara JP, Hamze M. 2022. Trends in the epidemiology of dermatophytosis in the Middle East and North Africa region. Int J Dermatol. 61(8):935-968. doi: 10.1111/ijd.15967. Epub 2021 Nov 12. PMID: 34766622.

18. Reed A, Olszewska MA, Mann A, Novoa Rama E, Thippareddi H, Singh M, den Bakker HC. 2022. Draft genome sequences of two lactobacillus johnsonii and three Ligilactobacillus salivarius strains isolated from intestinal microbiomes of chickens. Microbiol Resour Announc. 11(2):e0092521. doi: 10.1128/mra.00925-21. Epub 2022 Feb 3. PMID: 35112897; PMCID: PMC8812308.

19. van der Putten BCL, Mendes CI, Talbot BM, de Korne-Elenbaas J, Mamede R, Vila-Cerqueira P, Coelho LP, Gulvik CA, Katz LS. 2022. The Asm Ngs Hackathon participants. software testing in microbial bioinformatics: a call to action. Microb Genom. 8(3). doi: 10.1099/mgen.0.000790. PMID: 35259087.

20. Xian Z, Li S, Mann DA, Huang Y, Xu F, Wu X, Tang S, Zhang G, Stevenson A, Ge C, Deng X. 2022. Subtyping evaluation of Salmonella Enteritidis using single nucleotide polymorphism and core genome multilocus sequence typing with nanopore reads. Appl Environ Microbiol. 88(15):e0078522. doi: 10.1128/aem.00785-22. Epub 2022 Jul 12. PMID: 35867567; PMCID: PMC9361833.

21. Yoon JY, Yeom W, Kim H, Beuchat LR, Ryu JH. 2022. Effects of temperature, pH and sodium chloride on antimicrobial activity of magnesium oxide nanoparticles against E. coli O157:H7. J Appl Microbiol. doi: 10.1111/jam.15719. Epub ahead of print. PMID: 35894203.